STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL53117.1Phosphatidate phosphatase APP1. (348 aa)    
Predicted Functional Partners:
SCL53116.1
Hypothetical protein; Belongs to the UPF0246 family.
       0.557
SCL53122.1
Asparagine synthase (glutamine-hydrolysing).
       0.503
SCL47692.1
Dienelactone hydrolase.
    
   0.420
SCL49734.1
Carboxymethylenebutenolidase.
    
   0.420
SCL50914.1
Hypothetical protein.
    
   0.420
SCL64407.1
Lipopolysaccharide kinase (Kdo/WaaP) family protein.
  
     0.408
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.