STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL53251.1Cytidine deaminase. (132 aa)    
Predicted Functional Partners:
SCL52890.1
5'-nucleotidase.
    
  0.901
SCL49355.1
Thymidine phosphorylase.
  
 
 0.897
SCL56230.1
Thymidine kinase.
    
 0.858
SCL57031.1
Hypothetical protein.
    
 0.849
SCL65272.1
Purine-nucleoside phosphorylase.
  
 
 0.738
SCL58975.1
Putative hydrolase of the HAD superfamily.
  
  
  0.718
SCL49367.1
Uridine kinase.
    
 0.713
SCL61626.1
Hypothetical protein.
    
 0.698
SCL55174.1
5'-nucleotidase.
     
 0.690
SCL61297.1
Hypothetical protein.
  
 
  0.661
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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