STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL53369.1Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family. (618 aa)    
Predicted Functional Partners:
SCL59784.1
Trehalose 6-phosphate synthase.
 
  
 0.849
SCL61585.1
Trehalose 6-phosphate synthase.
 
  
 0.845
SCL49579.1
Trehalose 6-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
 
  
 0.781
SCL53373.1
Glucose 1-dehydrogenase.
       0.773
SCL57125.1
Maltooligosyl trehalose hydrolase.
 
 
 0.750
SCL62277.1
Maltose alpha-D-glucosyltransferase/ alpha-amylase.
 
  
 0.723
SCL57128.1
(1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase.
 
  
 0.616
SCL46834.1
Alpha,alpha-trehalose phosphorylase.
     
 0.606
SCL49326.1
Alpha-glucosidase; Belongs to the glycosyl hydrolase 13 family.
    
 0.566
SCL53365.1
Hypothetical protein.
       0.542
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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