STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL53413.1Rho termination factor, N-terminal domain. (133 aa)    
Predicted Functional Partners:
SCL53435.1
Glycosyl transferases group 1.
 
     0.727
SCL53432.1
Histidinol-phosphate phosphatase family domain-containing protein/HAD-superfamily hydrolase, subfamily IIIA.
 
     0.685
SCL53438.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.678
SCL53448.1
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.669
SCL62560.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.659
SCL53452.1
ADP-heptose:LPS heptosyltransferase.
 
     0.653
SCL61818.1
Uncharacterised nucleotidyltransferase.
  
     0.647
SCL46787.1
Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase.
  
     0.601
SCL47476.1
ADP-heptose:LPS heptosyltransferase.
 
     0.585
SCL53410.1
Membrane protein.
 
     0.579
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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