STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL53423.1Glycosyltransferase involved in cell wall bisynthesis. (613 aa)    
Predicted Functional Partners:
SCL56157.1
Dolichol-phosphate mannosyltransferase.
  
  
 
0.854
SCL50116.1
GtrA-like protein.
 
 
 
0.714
SCL58435.1
Glycosyl transferase family 2.
  
  
  0.698
SCL65940.1
Glycosyl transferase family 2.
  
  
 
0.677
SCL59667.1
Glycosyltransferase like family 2.
  
 
  0.628
SCL53429.1
Polyketide cyclase / dehydrase and lipid transport.
   
   0.587
SCL61243.1
Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains.
  
 
 0.551
SCL53425.1
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.548
SCL53432.1
Histidinol-phosphate phosphatase family domain-containing protein/HAD-superfamily hydrolase, subfamily IIIA.
  
 0.500
SCL60013.1
Hypothetical protein.
 
 
  0.449
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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