STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL53786.1Hypothetical protein. (440 aa)    
Predicted Functional Partners:
SCL53777.1
O-antigen ligase like membrane protein.
 
    0.932
SCL53782.1
Sulfotransferase domain-containing protein.
 
     0.932
SCL53774.1
Hypothetical protein.
 
     0.930
SCL53779.1
Membrane protein involved in the export of O-antigen and teichoic acid.
 
     0.928
SCL53767.1
Hypothetical protein.
 
     0.876
SCL53795.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.835
SCL53792.1
UDP-N-acetylglucosamine transferase subunit ALG13.
 
     0.834
SCL53788.1
Oligosaccharide biosynthesis protein Alg14 like.
 
     0.813
SCL47673.1
CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
     0.710
SCL53771.1
Acetyltransferase (isoleucine patch superfamily).
       0.696
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.