Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCL54142.1Hypothetical protein. (288 aa)    
Predicted Functional Partners:
SCL54144.1
Putative peptidoglycan lipid II flippase.
 
   
 0.954
SCL54137.1
Copper transport outer membrane protein, MctB.
 
     0.941
SCL54135.1
Uncharacterized membrane-anchored protein.
 
     0.923
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
  
 0.847
SCL54149.1
Hypothetical protein.
 
     0.817
SCL56857.1
Protein of unknown function.
 
     0.796
SCL50448.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
    
 0.667
SCL66029.1
Undecaprenyl-phosphate galactose phosphotransferase, WbaP/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
    
 0.667
SCL56431.1
UDP-N-acetyl-D-glucosamine dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
 
 0.637
SCL58776.1
UDP-N-acetylmuramoylalanine--D-glutamate ligase; Belongs to the MurCDEF family.
  
  
 0.609
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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