STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL54189.1GDSL-like Lipase/Acylhydrolase family protein. (390 aa)    
Predicted Functional Partners:
SCL65325.1
Endoglucanase.
  
 0.668
SCL65479.1
Aryl-phospho-beta-D-glucosidase BglC, GH1 family.
  
 0.668
cmk
Cytidylate kinase.
  
    0.551
SCL57770.1
Type VII secretion protein EccB.
  
 
  0.550
der
GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.539
SCL50446.1
Pectate lyase superfamily protein.
  
  0.529
SCL58017.1
F5/8 type C domain-containing protein.
  
  0.529
SCL65523.1
Right handed beta helix region.
  
  0.529
SCL64600.1
Phage-related minor tail protein.
   
   0.523
SCL64606.1
Hypothetical protein.
  
   0.517
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.