STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL54318.1Predicted amidohydrolase. (289 aa)    
Predicted Functional Partners:
SCL54315.1
Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  0.833
SCL59368.1
Glutamate synthase (NADH) large subunit.
 
  
  0.760
SCL54325.1
Taurine---2-oxoglutarate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.754
SCL55927.1
Allantoinase.
  
 
 0.722
panC
Pantothenate synthetase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
  
  
 0.716
SCL59223.1
Nicotinamide-nucleotide adenylyltransferase, NadR type.
    
 0.714
SCL60908.1
Taurine---2-oxoglutarate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.702
SCL50542.1
Dephospho-CoA kinase.
   
  0.687
SCL49407.1
Aldehyde dehydrogenase (acceptor).
   
  0.685
SCL58137.1
Acyl-CoA reductase; Belongs to the aldehyde dehydrogenase family.
   
  0.683
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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