STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL54322.1Amino acid synthesis. (187 aa)    
Predicted Functional Partners:
SCL54325.1
Taurine---2-oxoglutarate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.695
SCL54329.1
Dihydropyrimidinase.
 
     0.621
SCL54333.1
5,10-methylenetetrahydromethanopterin reductase.
 
     0.555
SCL54309.1
NitT/TauT family transport system substrate-binding protein.
 
     0.516
SCL54315.1
Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.493
SCL54318.1
Predicted amidohydrolase.
       0.493
SCL54313.1
Transcriptional regulator, IclR family.
 
     0.489
SCL54336.1
Reduced coenzyme F420:NADP oxidoreductase.
       0.452
SCL54339.1
N-carbamoylputrescine amidase.
       0.452
SCL54343.1
2-phospho-L-lactate guanylyltransferase.
       0.452
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.