STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL54336.1Reduced coenzyme F420:NADP oxidoreductase. (231 aa)    
Predicted Functional Partners:
SCL54333.1
5,10-methylenetetrahydromethanopterin reductase.
 
    0.903
SCL54343.1
2-phospho-L-lactate guanylyltransferase.
       0.778
SCL54339.1
N-carbamoylputrescine amidase.
       0.773
SCL49934.1
Coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase.
 
     0.637
SCL54329.1
Dihydropyrimidinase.
       0.634
SCL54348.1
EamA-like transporter family protein.
       0.572
SCL49938.1
LPPG:FO 2-phospho-L-lactate transferase.
 
     0.547
SCL54325.1
Taurine---2-oxoglutarate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.512
SCL54322.1
Amino acid synthesis.
       0.452
SCL49944.1
FO synthase subunit 1 /FO synthase subunit 2.
 
     0.444
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.