STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL54422.1Luciferase family oxidoreductase, group 1. (375 aa)    
Predicted Functional Partners:
SCL54418.1
Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase).
   
0.851
SCL56060.1
Thioesterase domain-containing protein.
   
 0.840
SCL65529.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 0.823
SCL54406.1
Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase).
 
     0.812
SCL54414.1
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family.
 
     0.812
SCL54394.1
Peptide/nickel transport system substrate-binding protein.
 
     0.736
SCL56057.1
Phosphopantetheine attachment site.
   
 0.673
SCL54404.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.666
SCL54397.1
Peptide/nickel transport system permease protein.
       0.662
SCL54401.1
Peptide/nickel transport system permease protein.
       0.662
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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