STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL54671.1ABC-2 type transport system permease protein. (239 aa)    
Predicted Functional Partners:
SCL54676.1
ABC-2 type transport system ATP-binding protein.
 
    0.944
SCL54679.1
Two-component system, NarL family, sensor histidine kinase DesK.
 
    0.872
SCL54667.1
Golgi phosphoprotein 3 (GPP34).
 
     0.832
SCL54681.1
Two component transcriptional regulator, LuxR family.
 
     0.762
SCL54665.1
Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family.
       0.631
SCL60224.1
Zinc carboxypeptidase.
  
     0.566
SCL62221.1
RHS repeat-associated core domain-containing protein.
  
     0.561
SCL46778.1
Endonuclease, Uma2 family (restriction endonuclease fold).
  
     0.538
SCL58243.1
CGNR zinc finger domain-containing protein.
  
     0.490
SCL54242.1
Regulatory protein, luxR family.
  
     0.487
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.