STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL54681.1Two component transcriptional regulator, LuxR family. (200 aa)    
Predicted Functional Partners:
SCL54679.1
Two-component system, NarL family, sensor histidine kinase DesK.
 
  0.994
SCL46951.1
Signal transduction histidine kinase.
  
 0.885
SCL47435.1
Signal transduction histidine kinase.
 
 0.808
SCL46199.1
Signal transduction histidine kinase.
  
  0.807
SCL47960.1
Signal transduction histidine kinase.
  
  0.798
SCL58024.1
Signal transduction histidine kinase.
  
  0.798
SCL56899.1
Signal transduction histidine kinase.
  
  0.787
SCL50831.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.771
SCL65651.1
Signal transduction histidine kinase.
  
  0.765
SCL64011.1
Signal transduction histidine kinase.
 
  0.763
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.