STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL54713.1Transcriptional regulatory protein, C terminal. (1028 aa)    
Predicted Functional Partners:
SCL46951.1
Signal transduction histidine kinase.
 
 0.670
SCL51622.1
Signal transduction histidine kinase.
   
 0.489
SCL59223.1
Nicotinamide-nucleotide adenylyltransferase, NadR type.
   
    0.481
SCL54706.1
Benzoate/toluate 1,2-dioxygenase alpha subunit.
 
     0.478
SCL65075.1
Adenylate and Guanylate cyclase catalytic domain-containing protein.
 
 
 0.472
SCL54701.1
P-cumate 2,3-dioxygenase beta subunit.
 
     0.465
SCL50179.1
Diguanylate cyclase (GGDEF) domain-containing protein.
    
  0.463
SCL65189.1
Diguanylate cyclase (GGDEF) domain-containing protein.
    
  0.434
SCL50528.1
Probable phosphoglycerate mutase; Non-canonical start codon; manually curated.
  
     0.413
SCL56060.1
Thioesterase domain-containing protein.
     
 0.403
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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