STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL54720.1Hypothetical protein. (1229 aa)    
Predicted Functional Partners:
SCL51465.1
isopenicillin-N epimerase.
    
   0.634
SCL53659.1
Selenocysteine lyase/Cysteine desulfurase.
    
   0.634
SCL57371.1
Selenocysteine lyase/Cysteine desulfurase.
    
   0.634
SCL59033.1
Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
    
   0.634
SCL58948.1
Peptidase_C39 like family protein.
  
  
 0.631
SCL48960.1
Protein of unknown function.
  
    0.526
SCL53023.1
Peptidase_C39 like family protein.
  
     0.510
SCL57939.1
Beta-xylosidase.
  
     0.508
SCL46578.1
Protein of unknown function.
  
     0.492
SCL53071.1
Acyl-CoA reductase (LuxC).
  
     0.488
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.