STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL54726.1Hypothetical protein. (236 aa)    
Predicted Functional Partners:
SCL54729.1
Predicted dehydrogenase.
 
  
  0.952
SCL60835.1
Predicted dehydrogenase.
 
  
  0.761
SCL54734.1
Surfactin synthase thioesterase subunit.
       0.737
SCL63306.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
    
  0.681
SCL63309.1
Ig-like domain (group 3).
    
  0.681
SCL62586.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-).
  
     0.559
SCL56715.1
Predicted dehydrogenase.
 
  
  0.524
SCL54722.1
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
       0.523
SCL55098.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
  
     0.522
SCL47916.1
cephalosporin-C deacetylase.
  
     0.496
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.