STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL54810.1ABC-2 type transport system ATP-binding protein. (255 aa)    
Predicted Functional Partners:
SCL54815.1
ABC-2 type transport system permease protein.
 
    0.940
SCL54804.1
Hypothetical protein.
   
   0.787
SCL54800.1
Threonine dehydrogenase.
       0.773
SCL54809.1
Sugar-phosphatase.
       0.773
SCL54817.1
Glycosyltransferase like family 2.
       0.773
SCL54828.1
Leucine rich repeat variant.
  
    0.747
SCL54821.1
Glucose-fructose oxidoreductase.
       0.746
SCL54823.1
Sugar phosphate isomerase/epimerase.
       0.746
SCL61066.1
Lipooligosaccharide transport system permease protein.
  
 
  0.736
SCL54798.1
3-dehydroquinate synthase.
       0.689
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.