STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL54901.1Galactonate dehydratase. (376 aa)    
Predicted Functional Partners:
SCL56711.1
Fructuronate reductase; Belongs to the mannitol dehydrogenase family.
 
  
 0.785
SCL55763.1
D-mannonate dehydratase.
  
  
 
0.705
SCL61099.1
4-hydroxy-tetrahydrodipicolinate synthase.
 
  
 0.686
SCL54891.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
    
  0.659
dapA
4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
 
  
 0.658
SCL56678.1
2-dehydro-3-deoxygluconokinase.
 
  
  0.635
SCL55340.1
Sugar lactone lactonase YvrE.
 
  
  0.545
SCL54895.1
Pyruvate dehydrogenase E1 component beta subunit.
       0.532
SCL54899.1
Pyruvate dehydrogenase E1 component alpha subunit.
       0.532
SCL48047.1
2-deoxy-D-gluconate 3-dehydrogenase.
  
  
  0.513
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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