STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL54937.1Signal transduction histidine kinase. (369 aa)    
Predicted Functional Partners:
SCL54941.1
Two component transcriptional regulator, LuxR family.
 
  0.971
SCL54931.1
ABC-2 type transport system permease protein.
 
    0.864
SCL65709.1
Two component transcriptional regulator, LuxR family.
  
  0.838
SCL57343.1
Two-component system, NarL family, response regulator DesR.
  
  0.829
SCL57346.1
Two component transcriptional regulator, LuxR family.
  
  0.815
SCL52562.1
Two component transcriptional regulator, LuxR family.
  
  0.805
SCL46951.1
Signal transduction histidine kinase.
  
 0.802
SCL60384.1
Two component transcriptional regulator, LuxR family.
  
  0.797
SCL47957.1
Two component transcriptional regulator, LuxR family.
  
  0.793
SCL65655.1
Two component transcriptional regulator, LuxR family.
  
  0.789
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.