STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL54944.1Hypothetical protein. (111 aa)    
Predicted Functional Partners:
SCL65529.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.866
SCL56060.1
Thioesterase domain-containing protein.
  
 
 0.816
SCL54931.1
ABC-2 type transport system permease protein.
 
     0.685
SCL54937.1
Signal transduction histidine kinase.
 
     0.663
SCL50664.1
Protein of unknown function; Manually curated.
  
     0.642
SCL50588.1
Protein of unknown function.
  
     0.637
SCL54941.1
Two component transcriptional regulator, LuxR family.
 
     0.581
SCL56057.1
Phosphopantetheine attachment site.
  
 
 0.531
SCL47696.1
Cytochrome P450.
   
  0.515
SCL52325.1
Cytochrome P450.
   
  0.515
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.