STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL54966.1N-methylhydantoinase A. (686 aa)    
Predicted Functional Partners:
SCL54969.1
N-methylhydantoinase B.
 0.999
SCL59368.1
Glutamate synthase (NADH) large subunit.
    
 0.921
SCL55006.1
Maleamate amidohydrolase.
 
  
  0.852
SCL58152.1
Nicotinamidase-related amidase.
 
  
  0.805
SCL54962.1
Peptide/nickel transport system substrate-binding protein.
       0.655
SCL58131.1
Maleate isomerase.
 
   
 0.594
SCL55863.1
Nicotinamidase-related amidase.
 
  
  0.590
SCL46704.1
Valine dehydrogenase (NAD+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
    
 0.583
SCL54996.1
Fumarate reductase flavoprotein subunit.
 
    0.554
SCL54973.1
Ethanolamine utilization protein EutM.
       0.551
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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