STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL55065.1Conserved hypothetical protein. (526 aa)    
Predicted Functional Partners:
SCL55068.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.
       0.773
SCL55071.1
Uncharacterized OsmC-related protein.
  
    0.609
SCL55073.1
Hypothetical protein.
       0.603
SCL59970.1
Low temperature requirement protein LtrA.
  
     0.516
SCL57432.1
6-O-methylguanine DNA methyltransferase, DNA binding domain.
  
     0.468
SCL53023.1
Peptidase_C39 like family protein.
  
     0.459
SCL47036.1
Terpene synthase family, metal binding domain.
  
     0.457
SCL59430.1
Low temperature requirement protein LtrA.
  
     0.456
SCL58948.1
Peptidase_C39 like family protein.
  
     0.439
SCL55077.1
Transposase (or an inactivated derivative).
       0.432
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.