STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL55141.1Lysophospholipase L1. (1094 aa)    
Predicted Functional Partners:
SCL55137.1
Hypothetical protein.
 
  
  0.872
SCL55344.1
Cellulose binding domain-containing protein.
  
  0.783
SCL58017.1
F5/8 type C domain-containing protein.
 
  0.768
SCL54759.1
Cellulose binding domain-containing protein.
  
  0.741
SCL65479.1
Aryl-phospho-beta-D-glucosidase BglC, GH1 family.
 
 0.732
SCL65325.1
Endoglucanase.
 
 0.731
SCL55165.1
Poly(3-hydroxybutyrate) depolymerase.
  
     0.729
SCL55161.1
Poly(3-hydroxybutyrate) depolymerase.
  
     0.726
SCL55035.1
Alpha-L-arabinofuranosidase B (ABFB) domain-containing protein.
  
     0.679
SCL54777.1
Cellulose binding domain-containing protein.
  
  
  0.675
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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