STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL55157.1Cellulose binding domain-containing protein; Belongs to the glycosyl hydrolase 43 family. (584 aa)    
Predicted Functional Partners:
SCL52344.1
Beta-xylosidase.
     0.841
SCL55161.1
Poly(3-hydroxybutyrate) depolymerase.
 
    
0.823
SCL52454.1
Alpha-L-arabinofuranosidase B (ABFB) domain-containing protein.
 
 
 0.790
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.781
SCL57976.1
Hypothetical protein.
     0.774
SCL63832.1
alpha-N-arabinofuranosidase.
 
 
 0.734
SCL52447.1
Poly(3-hydroxybutyrate) depolymerase.
  
     0.724
SCL48075.1
O-Glycosyl hydrolase.
 
0.714
SCL55167.1
alpha-L-fucosidase 2.
 
  
 
0.706
SCL65523.1
Right handed beta helix region.
 
 
  0.698
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.