STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL55279.1Catechol 2,3-dioxygenase. (164 aa)    
Predicted Functional Partners:
SCL55250.1
Peptide/nickel transport system substrate-binding protein.
 
     0.900
SCL55286.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
 
  
  0.834
SCL55283.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
 
  
  0.831
SCL55267.1
3-hydroxy-3-methylglutaryl CoA synthase.
 
     0.821
SCL55272.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
    0.736
SCL55263.1
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component.
 
    0.733
SCL55254.1
Peptide/nickel transport system ATP-binding protein.
 
    0.731
SCL55326.1
Hypothetical protein.
  
  
  0.726
SCL55318.1
Enoyl-CoA hydratase/carnithine racemase.
  
  
  0.723
SCL61720.1
Htaa protein.
  
     0.723
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.