STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL55524.1Zinc carboxypeptidase. (941 aa)    
Predicted Functional Partners:
SCL53096.1
CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase.
  
     0.634
SCL52303.1
Chitobiase/beta-hexosaminidase C-terminal domain-containing protein.
  
     0.609
SCL50335.1
Hypothetical protein.
  
     0.592
SCL54196.1
2-hydroxymuconate semialdehyde hydrolase.
  
     0.585
SCL54244.1
Trypsin.
   
 0.576
SCL56654.1
Hypothetical protein.
   
 0.576
SCL57686.1
Snapalysin.
   
 0.576
SCL59960.1
Hypothetical protein.
   
 0.576
SCL52882.1
Terpene synthase family, metal binding domain.
  
     0.568
SCL62766.1
Zn-dependent protease with chaperone function.
  
     0.559
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.