STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL55588.1Hypothetical protein. (168 aa)    
Predicted Functional Partners:
SCL55574.1
Hypothetical protein.
 
     0.973
SCL55582.1
VWA domain containing CoxE-like protein.
 
     0.967
SCL55584.1
Hypothetical protein.
 
     0.967
SCL55578.1
AAA domain (dynein-related subfamily).
 
     0.958
SCL49976.1
Conserved DNA-binding protein YbaB; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
  
     0.745
SCL50623.1
Acetyltransferase (GNAT) domain-containing protein.
  
     0.604
SCL48660.1
Golgi phosphoprotein 3 (GPP34).
  
     0.593
SCL60475.1
Transcriptional regulator, TetR family.
  
     0.582
SCL65994.1
DinB superfamily protein.
  
     0.501
SCL62909.1
ABC-2 type transport system permease protein.
  
     0.462
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
Server load: medium (52%) [HD]