STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL55671.1Methylaspartate mutase sigma subunit. (149 aa)    
Predicted Functional Partners:
SCL55675.1
Glutamate mutase subunit E.
 
  0.999
SCL49444.1
methylmalonyl-CoA mutase.
  
 0.962
SCL61962.1
methylmalonyl-CoA mutase, N-terminal domain.
  
 0.962
SCL55684.1
Glutamate synthase conserved region-containing protein.
 
  
  0.937
SCL55677.1
Aspartate-ammonia ligase.
 
     0.860
SCL48984.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.783
SCL55688.1
3-oxoacyl-[acyl-carrier-protein] synthase-3.
 
     0.783
SCL54520.1
Acyl carrier protein; Manually curated.
  
  
  0.752
SCL55430.1
Acyl transferase domain-containing protein.
  
  
 0.729
SCL51613.1
L-glutamine synthetase.
  
  
  0.715
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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