STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL55700.1Hypothetical protein. (321 aa)    
Predicted Functional Partners:
SCL55711.1
Hypothetical protein.
  
 
  0.817
SCL55715.1
Acyl-CoA dehydrogenase.
  
 
  0.802
SCL55718.1
4'-phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.
       0.800
SCL55698.1
Acyl carrier protein.
       0.789
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
 
 0.779
SCL48984.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.775
SCL55690.1
ATP-grasp domain-containing protein.
  
 
  0.688
SCL52890.1
5'-nucleotidase.
    
  0.681
SCL62402.1
2-oxoglutarate dehydrogenase E1 component.
   
 
 0.681
SCL60327.1
2-oxoisovalerate dehydrogenase E1 component.
  
 
  0.679
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.