STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL55837.1Hypothetical protein. (285 aa)    
Predicted Functional Partners:
SCL55832.1
phenylacetate-CoA ligase.
 
     0.756
SCL47139.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
    
  0.615
SCL57800.1
Ferredoxin-NADP reductase.
    
  0.615
SCL54706.1
Benzoate/toluate 1,2-dioxygenase alpha subunit.
  
  
  0.571
SCL55831.1
Transcriptional regulator, IclR family.
       0.545
SCL55823.1
Kynurenine formamidase.
 
     0.518
SCL55827.1
2-methylcitrate dehydratase PrpD.
 
     0.500
SCL55821.1
Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family.
 
    0.492
SCL54701.1
P-cumate 2,3-dioxygenase beta subunit.
  
  
  0.491
SCL58295.1
Hypothetical protein.
  
   
 0.485
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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