STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL55863.1Nicotinamidase-related amidase. (200 aa)    
Predicted Functional Partners:
SCL55846.1
Peptide/nickel transport system permease protein.
       0.773
SCL55851.1
Peptide/nickel transport system permease protein.
       0.773
SCL55852.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.773
SCL55844.1
Peptide/nickel transport system substrate-binding protein.
  
    0.743
SCL58131.1
Maleate isomerase.
 
  
 0.743
SCL54969.1
N-methylhydantoinase B.
 
  
  0.642
SCL65529.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.636
SCL54966.1
N-methylhydantoinase A.
 
  
  0.590
SCL56060.1
Thioesterase domain-containing protein.
  
 
 0.583
SCL65785.1
Isochorismate hydrolase.
  
  
 0.583
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.