STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL55891.1Helix-turn-helix domain-containing protein. (305 aa)    
Predicted Functional Partners:
SCL55889.1
Nicotine blue oxidoreductase.
       0.773
SCL55893.1
Helix-turn-helix domain-containing protein.
       0.661
SCL54640.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
     0.639
SCL55895.1
Hypothetical protein.
       0.484
SCL59223.1
Nicotinamide-nucleotide adenylyltransferase, NadR type.
   
 
  0.483
SCL63987.1
TIGR03083 family protein.
   
   0.444
SCL50194.1
Hypothetical protein.
  
     0.429
SCL54685.1
Transcriptional regulator, TetR family.
  
     0.425
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.