STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL55937.1Selenium-binding protein 1. (468 aa)    
Predicted Functional Partners:
SCL59876.1
Menaquinol-cytochrome c reductase cytochrome c1 subunit precursor.
  
 0.959
SCL55934.1
Hypothetical protein.
 
     0.954
SCL65529.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.914
SCL56929.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.855
ssuB
Sulfonate transport system ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
       0.737
SCL55946.1
Sulfonate transport system permease protein.
       0.737
SCL55949.1
Sulfonate transport system substrate-binding protein.
       0.737
SCL59368.1
Glutamate synthase (NADH) large subunit.
    
  0.731
SCL46242.1
Thiosulfate/3-mercaptopyruvate sulfurtransferase.
  
  
  0.708
SCL59014.1
Thiosulfate/3-mercaptopyruvate sulfurtransferase.
  
  
  0.707
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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