STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL55972.16-pyruvoyl-tetrahydropterin synthase. (132 aa)    
Predicted Functional Partners:
SCL55970.1
Threonine dehydrogenase.
 
     0.959
SCL55976.1
Glycosyl transferases group 1.
 
     0.958
SCL55980.1
Hypothetical protein.
 
     0.956
folE
GTP cyclohydrolase I.
  
 
 0.942
SCL55983.1
Uncharacterized membrane protein YbhN, UPF0104 family.
 
     0.919
SCL57990.1
Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.815
SCL57991.1
Phosphoglycerol transferase MdoB.
 
     0.800
SCL54000.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
    
  0.780
SCL54605.1
CRP/FNR family transcriptional regulator, anaerobic regulatory protein.
    
  0.780
SCL59778.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
    
  0.780
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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