STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL55976.1Glycosyl transferases group 1. (357 aa)    
Predicted Functional Partners:
SCL55980.1
Hypothetical protein.
     0.973
SCL55972.1
6-pyruvoyl-tetrahydropterin synthase.
 
     0.958
SCL55970.1
Threonine dehydrogenase.
 
    0.953
SCL55983.1
Uncharacterized membrane protein YbhN, UPF0104 family.
 
    0.916
SCL57991.1
Phosphoglycerol transferase MdoB.
 
  
  0.815
SCL57990.1
Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
  
  0.802
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.685
SCL55990.1
5-amino-6-(5-phosphoribosylamino)uracil reductase.
 
     0.681
SCL57125.1
Maltooligosyl trehalose hydrolase.
   
 0.674
SCL57996.1
Methyltransferase, FkbM family.
  
     0.647
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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