STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL56092.1Histidine kinase-like ATPase domain-containing protein. (320 aa)    
Predicted Functional Partners:
SCL56103.1
MEDS: MEthanogen/methylotroph, DcmR Sensory domain.
 
   0.942
SCL60466.1
Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
  
   0.738
SCL51622.1
Signal transduction histidine kinase.
 
 
 0.717
SCL57214.1
Anti-anti-sigma factor.
  
 
 0.703
SCL46920.1
Response regulator receiver domain-containing protein.
 
 0.697
SCL61788.1
Protein of unknown function.
  
     0.684
SCL53339.1
Golgi phosphoprotein 3 (GPP34).
  
   0.671
SCL49417.1
Golgi phosphoprotein 3 (GPP34).
  
   0.666
SCL50179.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.661
SCL63509.1
Diguanylate cyclase/phosphodiesterase.
  
 
 0.661
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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