STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL56127.1L-lysine 2,3-aminomutase. (464 aa)    
Predicted Functional Partners:
SCL56135.1
Beta-lysine 5,6-aminomutase alpha subunit.
 
  
 0.984
SCL56140.1
Beta-lysine 5,6-aminomutase beta subunit.
 
  
  0.984
SCL56129.1
L-erythro-3,5-diaminohexanoate dehydrogenase.
 
     0.897
SCL56143.1
3-aminobutyryl-CoA ammonia-lyase.
 
     0.891
SCL56148.1
Conserved hypothetical protein.
 
     0.807
SCL64045.1
Uncharacterized conserved protein, DUF849 family.
 
   
 0.737
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
    
 0.598
SCL56134.1
Hypothetical protein.
       0.595
SCL65197.1
Aspartate kinase; Belongs to the aspartokinase family.
    
 0.544
SCL49410.1
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
    
 0.504
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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