Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SCL56325.1Serine phosphatase RsbU, regulator of sigma subunit. (387 aa)    
Predicted Functional Partners:
SCL53384.1
PAS fold-containing protein.
 
 0.902
SCL46947.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 0.881
SCL56322.1
Transcriptional regulator, MarR family.
 
    0.815
SCL47379.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
   0.768
SCL46951.1
Signal transduction histidine kinase.
  
 
 0.750
SCL61869.1
Stage II sporulation protein E (SpoIIE).
  
     0.741
SCL57208.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
     0.729
SCL46900.1
Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
  
   0.713
SCL52912.1
PAS domain S-box-containing protein.
  
     0.687
SCL46410.1
Stage II sporulation protein E (SpoIIE).
  
     0.632
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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