STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL56458.1NitT/TauT family transport system substrate-binding protein. (330 aa)    
Predicted Functional Partners:
SCL56456.1
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
 
  0.981
SCL56451.1
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
 
  0.978
SCL56447.1
NitT/TauT family transport system ATP-binding protein.
 
 
  0.977
SCL55946.1
Sulfonate transport system permease protein.
  
 
  0.856
SCL62693.1
NitT/TauT family transport system permease protein.
 
 
  0.856
SCL56513.1
Peptidylprolyl isomerase.
   
    0.800
infA
Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
   
    0.800
SCL55737.1
NitT/TauT family transport system permease protein.
 
 
  0.795
SCL54440.1
Taurine transport system permease protein.
 
 
  0.784
SCL56441.1
Aminocarboxymuconate-semialdehyde decarboxylase.
       0.773
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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