STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL56506.1Diguanylate Cyclase and Two-component system sensory domain-containing protein. (371 aa)    
Predicted Functional Partners:
SCL56500.1
Hypothetical protein.
 
     0.793
SCL50948.1
Hypothetical protein.
  
     0.747
SCL49982.1
Hypothetical protein.
  
     0.582
SCL61301.1
Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family.
  
     0.571
SCL52418.1
Exodeoxyribonuclease-3.
  
     0.568
SCL46778.1
Endonuclease, Uma2 family (restriction endonuclease fold).
  
     0.562
SCL50784.1
S-adenosylmethionine decarboxylase; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine.
  
     0.559
SCL56504.1
Hypothetical protein.
       0.546
SCL62310.1
Transcriptional regulator, AbiEi antitoxin, Type IV TA system.
  
     0.519
SCL63127.1
Predicted outer membrane protein.
  
     0.514
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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