STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL56520.1L,D-transpeptidase catalytic domain. (422 aa)    
Predicted Functional Partners:
SCL65005.1
Colicin V production protein.
 
     0.671
SCL51015.1
Cobalamin-independent synthase, Catalytic domain.
  
     0.605
SCL49694.1
Cell division protein FtsB.
 
     0.524
SCL45964.1
Uncharacterized membrane protein.
  
     0.508
SCL60043.1
Protein of unknown function.
  
     0.501
SCL56522.1
Right handed beta helix region.
       0.484
SCL46031.1
N-acetylmuramoyl-L-alanine amidase; Manually curated.
 
   
 0.459
SCL56517.1
Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
       0.431
SCL62783.1
Acetyltransferase (GNAT) family protein.
  
    0.405
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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