STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL56702.1Oxidoreductase family, C-terminal alpha/beta domain. (442 aa)    
Predicted Functional Partners:
SCL56715.1
Predicted dehydrogenase.
 
     0.915
SCL56706.1
Glucuronate isomerase.
    
  0.859
SCL56695.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
     0.823
SCL56711.1
Fructuronate reductase; Belongs to the mannitol dehydrogenase family.
       0.806
SCL62586.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-).
 
     0.745
SCL56708.1
L-fuconate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
       0.731
SCL56692.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
     0.655
SCL60835.1
Predicted dehydrogenase.
  
     0.647
SCL56688.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
     0.644
SCL54729.1
Predicted dehydrogenase.
  
     0.630
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.