STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL56706.1Glucuronate isomerase. (476 aa)    
Predicted Functional Partners:
SCL56711.1
Fructuronate reductase; Belongs to the mannitol dehydrogenase family.
 
 
 0.997
SCL63832.1
alpha-N-arabinofuranosidase.
     
 0.879
SCL55541.1
L-ribulose 5-phosphate 4-epimerase.
     
 0.876
SCL56702.1
Oxidoreductase family, C-terminal alpha/beta domain.
    
  0.859
SCL56715.1
Predicted dehydrogenase.
 
  
  0.850
SCL56708.1
L-fuconate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
     
 0.803
SCL55763.1
D-mannonate dehydratase.
 
   
 0.722
SCL56462.1
L-fuculose-phosphate aldolase.
     
 0.705
SCL57898.1
Xylan 1,4-beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.689
SCL55741.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.688
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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