STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL56794.1Cytosine/adenosine deaminase. (444 aa)    
Predicted Functional Partners:
SCL56797.1
Protein Atu4866.
 
     0.860
SCL60409.1
Cytosine/adenosine deaminase.
  
  
 
0.751
SCL63776.1
Hypothetical protein.
  
  0.665
SCL53924.1
Adenosylhomocysteine nucleosidase.
    
  0.661
SCL65393.1
Nucleoside phosphorylase.
    
 0.658
SCL52233.1
Spermine/spermidine synthase.
   
  0.612
SCL54899.1
Pyruvate dehydrogenase E1 component alpha subunit.
    
  0.586
SCL54895.1
Pyruvate dehydrogenase E1 component beta subunit.
    
  0.585
SCL56800.1
Transcriptional regulator, contains XRE-family HTH domain.
 
     0.584
SCL56790.1
Hypothetical protein.
       0.550
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.