STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL56814.1Transcriptional regulator, AsnC family. (167 aa)    
Predicted Functional Partners:
cobB
NAD-dependent protein deacetylase, SIR2 family; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
  
    0.776
SCL59223.1
Nicotinamide-nucleotide adenylyltransferase, NadR type.
   
    0.774
SCL54948.1
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain.
   
    0.714
SCL55631.1
DNA-binding transcriptional activator of the SARP family.
   
    0.678
SCL61591.1
uroporphyrinogen-III C-methyltransferase.
  
 
 0.654
SCL57541.1
Transcriptional regulator, HxlR family.
   
    0.652
SCL59884.1
Response regulator receiver protein.
   
    0.652
SCL48984.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.649
SCL56817.1
Hypothetical protein.
       0.641
SCL49505.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
   
  
 0.639
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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