STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL56896.1Putative RecB family exonuclease. (305 aa)    
Predicted Functional Partners:
SCL62637.1
ATP-dependent DNA helicase, Rep family; Manually curated.
   
  0.770
SCL56892.1
Zn-dependent protease (includes SpoIVFB); Belongs to the peptidase M50B family.
       0.614
SCL56903.1
Two component transcriptional regulator, LuxR family.
       0.614
SCL56899.1
Signal transduction histidine kinase.
       0.559
SCL56886.1
Hypothetical protein.
       0.537
SCL53570.1
KDO2-lipid IV(A) lauroyltransferase.
  
     0.529
SCL45895.1
TIGR00375 family protein.
   
  0.527
SCL57429.1
UvrD/REP helicase N-terminal domain-containing protein.
   
  0.527
SCL62707.1
DNA helicase-2 / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily.
   
  0.527
SCL62712.1
Superfamily I DNA or RNA helicase.
   
  0.527
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.