STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL56924.1Protein of unknown function. (217 aa)    
Predicted Functional Partners:
SCL46951.1
Signal transduction histidine kinase.
    
 0.679
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
 
  0.646
SCL50542.1
Dephospho-CoA kinase.
     
 0.624
SCL53921.1
Cellulose binding domain-containing protein.
  
     0.597
SCL63838.1
Phospholipase A2.
  
    0.584
SCL46186.1
Conserved repeat domain-containing protein.
  
   0.543
SCL46233.1
Hypothetical protein.
  
   0.543
SCL50243.1
WD40-like Beta Propeller Repeat.
  
   0.543
SCL46377.1
Pregnancy-associated plasma protein-A.
  
     0.508
SCL56919.1
Ca2+:H+ antiporter.
       0.506
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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