STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL57178.1Two-component system, OmpR family, sensor kinase. (474 aa)    
Predicted Functional Partners:
SCL46951.1
Signal transduction histidine kinase.
  
0.982
SCL63790.1
HAMP domain-containing protein.
 
 
0.979
SCL57180.1
Two-component system, OmpR family, response regulator.
 0.967
SCL62389.1
Two-component system, OmpR family, response regulator.
 0.871
SCL46953.1
Response regulator receiver domain-containing protein.
  0.857
SCL65502.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.853
SCL53643.1
Two-component system, OmpR family, response regulator.
 0.852
SCL63950.1
Two-component system, OmpR family, response regulator RegX3.
 0.849
SCL50024.1
Two-component system, OmpR family, response regulator MtrA.
 0.848
SCL52718.1
Two-component system, OmpR family, response regulator RegX3.
 0.848
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.