STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL57292.1Ferredoxin. (75 aa)    
Predicted Functional Partners:
SCL57295.1
Hypothetical protein; Belongs to the cytochrome P450 family.
 
  
 0.849
SCL63233.1
Assimilatory nitrate reductase (NADH) beta subunit.
    
 0.823
SCL48984.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
 
  
 0.810
SCL57307.1
Hypothetical protein.
    
  0.675
SCL62430.1
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.666
SCL54706.1
Benzoate/toluate 1,2-dioxygenase alpha subunit.
    
  0.665
SCL57299.1
Hypothetical protein.
       0.523
SCL48980.1
2-oxoglutarate ferredoxin oxidoreductase subunit beta.
 
  
 0.494
SCL57600.1
NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.487
SCL63977.1
NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.487
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.